Detailed information of SNP:
|
SNP ID:
sf0809547845(Gbrowse)
Chromosome: chr08 Position: 9547845 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 95.31% | 4.69% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 493 | 92.49% | 7.51% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 332 | 89.76% | 10.24% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809547845 | C->T | LOC_Os08g15740(LOC_Os08g15740.1) | INTRON |