Detailed information of SNP:
|
SNP ID:
sf0809548225(Gbrowse)
Chromosome: chr08 Position: 9548225 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 51.09% | 48.91% |
| All Indica | 780 | 37.44% | 62.56% |
| All Japonica | 482 | 78.01% | 21.99% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 367 | 47.68% | 52.32% |
| Indica II | 206 | 19.90% | 80.10% |
| Indica Intermediate | 207 | 36.71% | 63.29% |
| Temperate Japonica | 322 | 81.99% | 18.01% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809548225 | T->C | LOC_Os08g15740(LOC_Os08g15740.1) | Non-Synonymous SNP |