Detailed information of SNP:
|
SNP ID:
sf0809552557(Gbrowse)
Chromosome: chr08 Position: 9552557 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 65.03% | 34.97% |
| All Indica | 730 | 50.14% | 49.86% |
| All Japonica | 477 | 93.50% | 6.50% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 349 | 62.46% | 37.54% |
| Indica II | 191 | 26.70% | 73.30% |
| Indica Intermediate | 190 | 51.05% | 48.95% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 85 | 83.53% | 16.47% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809552557 | C->T | LOC_Os08g15760(LOC_Os08g15760.1) | Synonymous |