Detailed information of SNP:
|
SNP ID:
sf0809565297(Gbrowse)
Chromosome: chr08 Position: 9565297 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 93.49% | 6.51% |
| All Indica | 767 | 89.18% | 10.82% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 365 | 93.70% | 6.30% |
| Indica II | 200 | 78.50% | 21.50% |
| Indica Intermediate | 202 | 91.58% | 8.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809565297 | T->A | LOC_Os08g15790(LOC_Os08g15790.1) | Non-Synonymous SNP |