Detailed information of SNP:
|
SNP ID:
sf0809577438(Gbrowse)
Chromosome: chr08 Position: 9577438 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 98.02% | 1.98% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809577438 | C->T | INTERGENIC | None |