Detailed information of SNP:
|
SNP ID:
sf0809585156(Gbrowse)
Chromosome: chr08 Position: 9585156 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 60.69% | 39.31% |
| All Indica | 774 | 46.25% | 53.75% |
| All Japonica | 493 | 85.40% | 14.60% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 364 | 46.70% | 53.30% |
| Indica II | 207 | 48.31% | 51.69% |
| Indica Intermediate | 203 | 43.35% | 56.65% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809585156 | A->G | INTERGENIC | None |