Detailed information of SNP:
|
SNP ID:
sf0809614968(Gbrowse)
Chromosome: chr08 Position: 9614968 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.61% | 45.39% |
| All Indica | 792 | 60.73% | 39.27% |
| All Japonica | 495 | 52.32% | 47.68% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 66.13% | 33.87% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 209 | 59.33% | 40.67% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809614968 | T->C | LOC_Os08g15830(LOC_Os08g15830.1) | INTRON |