Detailed information of SNP:
|
SNP ID:
sf0809621375(Gbrowse)
Chromosome: chr08 Position: 9621375 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 95.33% | 4.67% |
| All Indica | 795 | 97.11% | 2.89% |
| All Japonica | 475 | 92.63% | 7.37% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 314 | 89.81% | 10.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809621375 | A->C | LOC_Os08g15830(LOC_Os08g15830.1) | Synonymous |