Detailed information of SNP:
|
SNP ID:
sf0809639954(Gbrowse)
Chromosome: chr08 Position: 9639954 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1278 | 53.60% | 46.40% |
| All Indica | 664 | 62.35% | 37.65% |
| All Japonica | 494 | 44.94% | 55.06% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 317 | 81.70% | 18.30% |
| Indica II | 178 | 29.21% | 70.79% |
| Indica Intermediate | 169 | 60.95% | 39.05% |
| Temperate Japonica | 334 | 58.08% | 41.92% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809639954 | T->C | INTERGENIC | None |