Detailed information of SNP:
|
SNP ID:
sf0809641895(Gbrowse)
Chromosome: chr08 Position: 9641895 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1192 | 52.68% | 47.32% |
| All Indica | 624 | 32.53% | 67.47% |
| All Japonica | 479 | 84.55% | 15.45% |
| Aus | 37 | 8.11% | 91.89% |
| Indica I | 269 | 33.09% | 66.91% |
| Indica II | 190 | 26.32% | 73.68% |
| Indica Intermediate | 165 | 38.79% | 61.21% |
| Temperate Japonica | 327 | 86.85% | 13.15% |
| Tropical Japonica | 86 | 74.42% | 25.58% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809641895 | A->G | INTERGENIC | None |