Detailed information of SNP:
|
SNP ID:
sf0809642290(Gbrowse)
Chromosome: chr08 Position: 9642290 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 62.25% | 37.75% |
| All Indica | 785 | 75.16% | 24.84% |
| All Japonica | 497 | 45.88% | 54.12% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 366 | 90.44% | 9.56% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 207 | 76.81% | 23.19% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809642290 | T->C | INTERGENIC | None |