Detailed information of SNP:
|
SNP ID:
sf0809646550(Gbrowse)
Chromosome: chr08 Position: 9646550 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.01% | 3.99% |
| All Indica | 789 | 96.20% | 3.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809646550 | C->T | INTERGENIC | None |