Detailed information of SNP:
|
SNP ID:
sf0809651920(Gbrowse)
Chromosome: chr08 Position: 9651920 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 77.71% | 22.29% |
| All Indica | 796 | 90.83% | 9.17% |
| All Japonica | 488 | 54.10% | 45.90% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 86.86% | 13.14% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 329 | 39.21% | 60.79% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809651920 | T->C | LOC_Os08g15870(LOC_Os08g15870.1) | Non-Synonymous SNP |