Detailed information of SNP:
|
SNP ID:
sf0809656700(Gbrowse)
Chromosome: chr08 Position: 9656700 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1299 | 94.61% | 5.39% |
| All Indica | 701 | 93.72% | 6.28% |
| All Japonica | 479 | 96.03% | 3.97% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 330 | 92.12% | 7.88% |
| Indica II | 188 | 94.15% | 5.85% |
| Indica Intermediate | 183 | 96.17% | 3.83% |
| Temperate Japonica | 327 | 96.02% | 3.98% |
| Tropical Japonica | 86 | 97.67% | 2.33% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809656700 | G->A | INTERGENIC | None |