Detailed information of SNP:
|
SNP ID:
sf0809665829(Gbrowse)
Chromosome: chr08 Position: 9665829 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 71.10% | 28.90% |
| All Indica | 796 | 51.76% | 48.24% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 49.87% | 50.13% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809665829 | C->G | LOC_Os08g15880(LOC_Os08g15880.1) | INTRON |