Detailed information of SNP:
|
SNP ID:
sf0809691782(Gbrowse)
Chromosome: chr08 Position: 9691782 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 71.16% | 28.84% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 491 | 33.40% | 66.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 12.91% | 87.09% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809691782 | T->C | LOC_Os08g15920(LOC_Os08g15920.1) | UTR_5_PRIME |