Detailed information of SNP:
|
SNP ID:
sf0809698942(Gbrowse)
Chromosome: chr08 Position: 9698942 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 51.06% | 48.94% |
| All Indica | 768 | 24.61% | 75.39% |
| All Japonica | 494 | 93.12% | 6.88% |
| Aus | 52 | 38.46% | 61.54% |
| Indica I | 373 | 17.43% | 82.57% |
| Indica II | 185 | 41.62% | 58.38% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809698942 | G->A | INTERGENIC | None |