Detailed information of SNP:
|
SNP ID:
sf0809702432(Gbrowse)
Chromosome: chr08 Position: 9702432 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.62% | 37.38% |
| All Indica | 794 | 43.32% | 56.68% |
| All Japonica | 494 | 96.36% | 3.64% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 49.87% | 50.13% |
| Indica II | 208 | 29.81% | 70.19% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809702432 | C->T | INTERGENIC | None |