Detailed information of SNP:
|
SNP ID:
sf0809706299(Gbrowse)
Chromosome: chr08 Position: 9706299 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 64.22% | 35.78% |
| All Indica | 721 | 85.71% | 14.29% |
| All Japonica | 489 | 30.06% | 69.94% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 366 | 84.97% | 15.03% |
| Indica II | 177 | 79.66% | 20.34% |
| Indica Intermediate | 178 | 93.26% | 6.74% |
| Temperate Japonica | 333 | 10.81% | 89.19% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809706299 | A->G | INTERGENIC | None |