Detailed information of SNP:
|
SNP ID:
sf0809708075(Gbrowse)
Chromosome: chr08 Position: 9708075 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 55.14% | 44.86% |
| All Indica | 791 | 81.42% | 18.58% |
| All Japonica | 491 | 7.33% | 92.67% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 206 | 77.67% | 22.33% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 331 | 6.34% | 93.66% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809708075 | G->A | INTERGENIC | None |