Detailed information of SNP:
|
SNP ID:
sf0809712532(Gbrowse)
Chromosome: chr08 Position: 9712532 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.00% | 27.00% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 494 | 35.43% | 64.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809712532 | A->G | INTERGENIC | None |