Detailed information of SNP:
|
SNP ID:
sf0809724091(Gbrowse)
Chromosome: chr08 Position: 9724091 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 66.17% | 33.83% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 486 | 16.87% | 83.13% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 331 | 13.60% | 86.40% |
| Tropical Japonica | 89 | 29.21% | 70.79% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809724091 | T->C | LOC_Os08g15970(LOC_Os08g15970.1) | INTRON |