Detailed information of SNP:
|
SNP ID:
sf0809821179(Gbrowse)
Chromosome: chr08 Position: 9821179 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 78.84% | 21.16% |
| All Indica | 774 | 78.04% | 21.96% |
| All Japonica | 491 | 81.47% | 18.53% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 364 | 79.67% | 20.33% |
| Indica II | 206 | 80.58% | 19.42% |
| Indica Intermediate | 204 | 72.55% | 27.45% |
| Temperate Japonica | 333 | 90.99% | 9.01% |
| Tropical Japonica | 90 | 61.11% | 38.89% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809821179 | A->T | INTERGENIC | None |