Detailed information of SNP:
|
SNP ID:
sf0809822053(Gbrowse)
Chromosome: chr08 Position: 9822053 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 71.12% | 28.88% |
| All Indica | 795 | 67.80% | 32.20% |
| All Japonica | 490 | 78.57% | 21.43% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 334 | 89.52% | 10.48% |
| Tropical Japonica | 90 | 51.11% | 48.89% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809822053 | G->A | INTERGENIC | None |