Detailed information of SNP:
|
SNP ID:
sf0809827412(Gbrowse)
Chromosome: chr08 Position: 9827412 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1262 | 76.31% | 23.69% |
| All Indica | 742 | 69.81% | 30.19% |
| All Japonica | 405 | 90.62% | 9.38% |
| Aus | 64 | 45.31% | 54.69% |
| Indica I | 364 | 65.11% | 34.89% |
| Indica II | 187 | 80.75% | 19.25% |
| Indica Intermediate | 191 | 68.06% | 31.94% |
| Temperate Japonica | 324 | 89.20% | 10.80% |
| Tropical Japonica | 43 | 100.00% | 0.00% |
| Japonica Intermediate | 38 | 92.11% | 7.89% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809827412 | A->G | LOC_Os08g16120(LOC_Os08g16120.1) | UTR_3_PRIME |
| sf0809827412 | A->G | LOC_Os08g16120(LOC_Os08g16120.2) | UTR_3_PRIME |