Detailed information of SNP:
|
SNP ID:
sf0809840372(Gbrowse)
Chromosome: chr08 Position: 9840372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 96.90% | 3.10% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 436 | 91.51% | 8.49% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 90.43% | 9.57% |
| Tropical Japonica | 89 | 93.26% | 6.74% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809840372 | C->T | LOC_Os08g16140(LOC_Os08g16140.1) | INTRON |