Detailed information of SNP:
|
SNP ID:
sf0809842326(Gbrowse)
Chromosome: chr08 Position: 9842326 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 65.81% | 34.19% |
| All Indica | 782 | 51.53% | 48.47% |
| All Japonica | 496 | 89.31% | 10.69% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 369 | 50.41% | 49.59% |
| Indica II | 205 | 60.98% | 39.02% |
| Indica Intermediate | 208 | 44.23% | 55.77% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809842326 | C->T | LOC_Os08g16140(LOC_Os08g16140.1) | Non-Synonymous SNP |