Detailed information of SNP:
|
SNP ID:
sf0809843397(Gbrowse)
Chromosome: chr08 Position: 9843397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 91.74% | 8.26% |
| All Indica | 787 | 94.79% | 5.21% |
| All Japonica | 495 | 88.89% | 11.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 333 | 90.09% | 9.91% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809843397 | C->T | LOC_Os08g16140(LOC_Os08g16140.1) | Non-Synonymous SNP |