Detailed information of SNP:
|
SNP ID:
sf0809847740(Gbrowse)
Chromosome: chr08 Position: 9847740 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 92.62% | 7.38% |
| All Indica | 794 | 94.96% | 5.04% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 333 | 90.39% | 9.61% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809847740 | C->T | LOC_Os08g16160(LOC_Os08g16160.1) | Non-Synonymous SNP |