Detailed information of SNP:
|
SNP ID:
sf0809852795(Gbrowse)
Chromosome: chr08 Position: 9852795 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 98.92% | 1.08% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 474 | 97.47% | 2.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 98.10% | 1.90% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809852795 | T->C | LOC_Os08g16170(LOC_Os08g16170.1) | INTRON |