Detailed information of SNP:
|
SNP ID:
sf0809870498(Gbrowse)
Chromosome: chr08 Position: 9870498 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 94.31% | 5.69% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 485 | 84.95% | 15.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 84 | 46.43% | 53.57% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809870498 | A->G | LOC_Os08g16190(LOC_Os08g16190.1) | Non-Synonymous SNP |