Detailed information of SNP:
|
SNP ID:
sf0809914179(Gbrowse)
Chromosome: chr08 Position: 9914179 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.70% | 16.30% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 496 | 68.95% | 31.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809914179 | C->T | INTERGENIC | None |