Detailed information of SNP:



SNP ID: sf0809914179(Gbrowse)

Chromosome: chr08

Position: 9914179
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 83.70% 16.30%
All Indica799 93.49% 6.51%
All Japonica496 68.95% 31.05%
Aus67 100.00% 0.00%
Indica I375 97.07% 2.93%
Indica II213 91.08% 8.92%
Indica Intermediate211 89.57% 10.43%
Temperate Japonica335 87.46% 12.54%
Tropical Japonica93 19.35% 80.65%
Japonica Intermediate68 45.59% 54.41%
Group VI/Aromatic13 7.69% 92.31%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0809914179 C->T INTERGENIC None