Detailed information of SNP:
|
SNP ID:
sf0809919333(Gbrowse)
Chromosome: chr08 Position: 9919333 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1317 | 96.89% | 3.11% |
| All Indica | 704 | 94.89% | 5.11% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 330 | 95.76% | 4.24% |
| Indica II | 188 | 94.15% | 5.85% |
| Indica Intermediate | 186 | 94.09% | 5.91% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809919333 | C->T | LOC_Os08g16255(LOC_Os08g16255.1) | SNPs that introduce initiation codons |