Detailed information of SNP:
|
SNP ID:
sf0809930545(Gbrowse)
Chromosome: chr08 Position: 9930545 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 74.68% | 25.32% |
| All Indica | 734 | 69.62% | 30.38% |
| All Japonica | 484 | 78.72% | 21.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 69.79% | 30.21% |
| Indica II | 201 | 74.13% | 25.87% |
| Indica Intermediate | 192 | 64.58% | 35.42% |
| Temperate Japonica | 329 | 97.57% | 2.43% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 64 | 46.88% | 53.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809930545 | C->A | INTERGENIC | None |