Detailed information of SNP:
|
SNP ID:
sf0809945691(Gbrowse)
Chromosome: chr08 Position: 9945691 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 84.22% | 15.78% |
| All Indica | 795 | 76.23% | 23.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 371 | 68.19% | 31.81% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809945691 | C->T | LOC_Os08g16290(LOC_Os08g16290.1) | INTRON |