Detailed information of SNP:
|
SNP ID:
sf0809947049(Gbrowse)
Chromosome: chr08 Position: 9947049 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 53.33% | 46.67% |
| All Indica | 791 | 72.57% | 27.43% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 367 | 80.38% | 19.62% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0809947049 | C->T | INTERGENIC | None |