Detailed information of SNP:
|
SNP ID:
sf0810012106(Gbrowse)
Chromosome: chr08 Position: 10012106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.47% | 9.53% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 66.17% | 33.83% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810012106 | G->A | LOC_Os08g16380(LOC_Os08g16380.1) | Synonymous |