Detailed information of SNP:
|
SNP ID:
sf0810031314(Gbrowse)
Chromosome: chr08 Position: 10031314 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.10% | 28.90% |
| All Indica | 799 | 51.94% | 48.06% |
| All Japonica | 493 | 97.36% | 2.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810031314 | C->T | INTERGENIC | None |