Detailed information of SNP:
|
SNP ID:
sf0810039458(Gbrowse)
Chromosome: chr08 Position: 10039458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.85% | 30.15% |
| All Indica | 797 | 51.07% | 48.93% |
| All Japonica | 495 | 95.56% | 4.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 50.13% | 49.87% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810039458 | C->T | INTERGENIC | None |