Detailed information of SNP:
|
SNP ID:
sf0810049416(Gbrowse)
Chromosome: chr08 Position: 10049416 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.67% | 19.33% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 493 | 59.84% | 40.16% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810049416 | A->G | INTERGENIC | None |