Detailed information of SNP:
|
SNP ID:
sf0810064981(Gbrowse)
Chromosome: chr08 Position: 10064981 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1333 | 50.34% | 49.66% |
| All Indica | 740 | 63.38% | 36.62% |
| All Japonica | 479 | 31.32% | 68.68% |
| Aus | 61 | 63.93% | 36.07% |
| Indica I | 342 | 66.67% | 33.33% |
| Indica II | 204 | 55.88% | 44.12% |
| Indica Intermediate | 194 | 65.46% | 34.54% |
| Temperate Japonica | 329 | 37.99% | 62.01% |
| Tropical Japonica | 89 | 13.48% | 86.52% |
| Japonica Intermediate | 61 | 21.31% | 78.69% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 25.64% | 74.36% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810064981 | T->C | INTERGENIC | None |