Detailed information of SNP:
|
SNP ID:
sf0810066404(Gbrowse)
Chromosome: chr08 Position: 10066404 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 56.44% | 43.56% |
| All Indica | 788 | 30.96% | 69.04% |
| All Japonica | 489 | 97.55% | 2.45% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 369 | 21.68% | 78.32% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 207 | 24.64% | 75.36% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810066404 | T->C | INTERGENIC | None |