Detailed information of SNP:
|
SNP ID:
sf0810143932(Gbrowse)
Chromosome: chr08 Position: 10143932 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.97% | 29.03% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 51.71% | 48.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810143932 | G->A | INTERGENIC | None |