Detailed information of SNP:
|
SNP ID:
sf0810144476(Gbrowse)
Chromosome: chr08 Position: 10144476 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.61% | 18.39% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 54.33% | 45.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810144476 | T->C | INTERGENIC | None |