Detailed information of SNP:
|
SNP ID:
sf0810145041(Gbrowse)
Chromosome: chr08 Position: 10145041 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 58.02% | 41.98% |
| All Indica | 778 | 66.84% | 33.16% |
| All Japonica | 497 | 46.68% | 53.32% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 358 | 79.89% | 20.11% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810145041 | A->G | INTERGENIC | None |