Detailed information of SNP:
|
SNP ID:
sf0810151165(Gbrowse)
Chromosome: chr08 Position: 10151165 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 92.84% | 7.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 489 | 80.37% | 19.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 90 | 27.78% | 72.22% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810151165 | C->T | LOC_Os08g16600(LOC_Os08g16600.1) | Non-Synonymous SNP |