Detailed information of SNP:
|
SNP ID:
sf0810159293(Gbrowse)
Chromosome: chr08 Position: 10159293 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 70.06% | 29.94% |
| All Indica | 797 | 65.50% | 34.50% |
| All Japonica | 497 | 73.44% | 26.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810159293 | A->G | LOC_Os08g16610(LOC_Os08g16610.1) | UTR_5_PRIME |