Detailed information of SNP:
|
SNP ID:
sf0810205023(Gbrowse)
Chromosome: chr08 Position: 10205023 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 56.50% | 43.50% |
| All Indica | 779 | 34.92% | 65.08% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 361 | 21.61% | 78.39% |
| Indica II | 209 | 60.77% | 39.23% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810205023 | C->T | LOC_Os08g16680(LOC_Os08g16680.1) | Non-Synonymous SNP |