Detailed information of SNP:
|
SNP ID:
sf0810249543(Gbrowse)
Chromosome: chr08 Position: 10249543 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 87.53% | 12.47% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 492 | 71.14% | 28.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 91 | 27.47% | 72.53% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810249543 | G->A | LOC_Os08g16760(LOC_Os08g16760.1) | Non-Synonymous SNP |