Detailed information of SNP:
|
SNP ID:
sf0810393816(Gbrowse)
Chromosome: chr08 Position: 10393816 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1210 | 83.97% | 16.03% |
| All Indica | 624 | 69.55% | 30.45% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 37 | 97.30% | 2.70% |
| Indica I | 274 | 63.14% | 36.86% |
| Indica II | 187 | 85.03% | 14.97% |
| Indica Intermediate | 163 | 62.58% | 37.42% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810393816 | C->T | INTERGENIC | None |